##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index6_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22776199	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.981197960203982	33.0	31.0	34.0	30.0	34.0
2	32.12848236880965	33.0	31.0	34.0	30.0	34.0
3	32.197552058620495	34.0	31.0	34.0	30.0	34.0
4	35.67852489346445	37.0	35.0	37.0	33.0	37.0
5	35.65728917278954	37.0	35.0	37.0	33.0	37.0
6	35.6149017226272	37.0	35.0	37.0	33.0	37.0
7	35.629708451353096	37.0	35.0	37.0	33.0	37.0
8	35.607413291392476	37.0	35.0	37.0	33.0	37.0
9	37.25356930715261	39.0	37.0	39.0	34.0	39.0
10-14	37.4554701598805	39.2	37.2	39.4	33.0	39.4
15-19	38.38891376036888	40.0	38.0	41.0	33.2	41.0
20-24	38.16817763139494	40.0	38.0	41.0	33.0	41.0
25-29	37.83985662401352	40.0	37.4	41.0	32.4	41.0
30-34	37.59641612720367	39.6	37.0	41.0	31.8	41.0
35-39	37.62356413376964	40.0	37.0	41.0	31.6	41.0
40-44	37.250623846410896	39.2	36.2	41.0	31.0	41.0
45-49	36.74083300729854	39.0	35.0	40.4	30.0	41.0
50-54	36.35644244239348	38.2	35.0	40.0	30.0	41.0
55-59	36.005053512221245	37.8	34.6	40.0	29.4	41.0
60-64	35.15594269263278	36.6	34.0	39.8	28.2	41.0
65-69	34.20943160006637	35.4	33.2	38.8	26.8	40.6
70-74	33.2187988698202	35.0	32.4	37.4	26.0	39.6
75-79	32.18204806693162	35.0	31.6	36.0	24.6	38.4
80-84	31.071753456316394	34.0	31.0	35.0	21.6	36.8
85-89	29.785891184038213	34.0	30.0	35.0	10.4	35.8
90	28.645251387204688	34.0	29.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	255.0
11	2861.0
12	8661.0
13	17282.0
14	27749.0
15	38553.0
16	47957.0
17	57140.0
18	65859.0
19	76144.0
20	87571.0
21	101720.0
22	118173.0
23	138395.0
24	164722.0
25	195407.0
26	233592.0
27	280305.0
28	339108.0
29	411412.0
30	504624.0
31	625735.0
32	790921.0
33	1024954.0
34	1399558.0
35	2023679.0
36	3072077.0
37	4277001.0
38	4464121.0
39	2147491.0
40	33171.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.72272037138418	11.870352028448645	10.592026351719179	53.814901248448
2	21.9221159949597	18.674600520672893	34.229313440294426	25.17397004407298
3	25.786088164258263	20.5374524540394	22.009396905889556	31.66706247581278
4	28.026100362295654	25.730344486812832	19.070287482537847	27.173267668353667
5	29.829654787212895	28.51126450192195	21.687291109836718	19.971789601028437
6	25.378934320480667	31.731282569256162	21.291579526624687	21.59820358363848
7	22.261071989808432	18.855850655405938	36.453041738310574	22.430035616475053
8	22.219392313251955	22.21236633236025	28.447898026318537	27.120343328069264
9	21.87067719568709	20.889805973902043	31.204026395678202	26.035490434732665
10-14	24.991235714847555	25.6844538707717	24.283600709461815	25.04070970491893
15-19	25.284202355893974	24.672944550797666	24.743329971681348	25.299523121627004
20-24	25.074058057329946	24.905912296088424	25.085809415590077	24.934220230991556
25-29	24.935750919188802	24.931817785862485	25.00407451186294	25.128356783085774
30-34	24.965314282784284	24.871178657882478	24.96923433194156	25.194272727391677
35-39	24.987565322996804	25.02785453704882	24.9262380105978	25.058342129356575
40-44	24.962151606622335	24.862556417830667	25.052155119881935	25.123136855665056
45-49	24.898231675947656	24.932000556565246	24.978596430790457	25.191171336696637
50-54	24.926560548983655	25.02266826971479	25.022350392778662	25.028420788522894
55-59	24.946874436345478	24.961036160122404	24.94687794889556	25.145211454636556
60-64	24.8711726148131	24.978124761645827	25.05892303981786	25.091779583723213
65-69	24.89886612564797	25.105062699357795	25.021791630963445	24.974279544030793
70-74	24.974099070935125	25.02906928139802	24.921879215102884	25.074952432563975
75-79	24.97112948457235	25.001059748427533	24.974831907916446	25.05297885908367
80-84	24.912694244126662	25.134279309869136	24.984075112935038	24.968951333069164
85-89	25.024947392120456	25.091225249997745	24.88436786934316	24.999459488538637
90	24.767154527516706	25.205096502312564	25.073618193489356	24.95413077668138
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.53762161983218
2	47.096086039032684
3	57.45315064007105
4	55.19936803064932
5	49.801444388241336
6	46.97713790411915
7	44.69110760628348
8	49.33973564132121
9	47.90616763041975
10-14	50.03194541976649
15-19	50.58372547752098
20-24	50.00827828832149
25-29	50.064107702274576
30-34	50.15958701017597
35-39	50.045907452353376
40-44	50.085288462287394
45-49	50.0894030126443
50-54	49.954981337506545
55-59	50.09208589098204
60-64	49.962952198536314
65-69	49.873145669678756
70-74	50.0490515034991
75-79	50.02410834365602
80-84	49.881645577195826
85-89	50.024406880659086
90	49.72128530419809
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	4.5
2	5.0
3	4.5
4	3.0
5	8.0
6	14.0
7	18.5
8	29.5
9	46.0
10	55.0
11	72.0
12	111.0
13	179.0
14	286.5
15	476.5
16	859.0
17	1474.5
18	2476.5
19	4339.5
20	5562.0
21	7566.5
22	12769.5
23	20516.0
24	31492.5
25	47006.0
26	68399.5
27	97027.5
28	130887.5
29	169474.5
30	190521.0
31	212590.5
32	258522.0
33	309747.0
34	365052.0
35	419216.0
36	475433.0
37	535518.5
38	588374.0
39	635269.0
40	659399.0
41	675777.0
42	707662.5
43	735904.0
44	755306.5
45	767461.5
46	770508.0
47	768158.5
48	771188.0
49	775789.5
50	777452.0
51	773004.5
52	770945.0
53	764772.5
54	761433.0
55	765401.0
56	759554.5
57	749057.5
58	730356.5
59	704070.5
60	690582.0
61	674050.0
62	639314.5
63	593741.5
64	538250.0
65	482759.0
66	421609.0
67	357530.5
68	300113.5
69	244190.0
70	215386.0
71	190535.5
72	145161.5
73	107146.5
74	74451.5
75	47970.0
76	28832.0
77	15792.5
78	7655.5
79	3251.0
80	1804.0
81	1265.0
82	512.5
83	210.0
84	93.0
85	45.5
86	25.5
87	23.5
88	18.0
89	11.5
90	9.0
91	7.0
92	3.0
93	1.5
94	2.0
95	2.0
96	1.5
97	0.5
98	0.0
99	0.5
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.016438212539326688
3	0.03728453549251129
4	0.0462675971526241
5	0.05068448866292395
6	0.004733010982209981
7	0.019467690811798756
8	0.015709381534645003
9	0.013509716875937026
10-14	0.01858694683867137
15-19	0.008255986874719528
20-24	0.004212291963202464
25-29	0.0020398487034645244
30-34	0.004278150186517074
35-39	0.0016517242407304222
40-44	8.745972056180225E-4
45-49	0.0034773141910114155
50-54	3.916369013108816E-4
55-59	0.0031743663637642085
60-64	9.597738411049184E-4
65-69	0.0041350183145133215
70-74	0.004189461112453399
75-79	0.008456195873595942
80-84	0.006450593446255014
85-89	0.006470789968071494
90	0.002542127419943951
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2776199E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.58192098600481
#Duplication Level	Relative count
1	100.0
2	30.333224436458675
3	15.626020908199935
4	9.67718882718066
5	6.68796961777197
6	4.7911221822933685
7	3.6885413263639335
8	2.9483828814113036
9	2.4583469454426656
10++	27.970842861809867
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5051625	2.6021535	5.5774283	1
CCTGG	5045995	2.5772107	6.288512	1
CTTCT	5010850	2.5552878	5.5816474	1
CTGGA	4718420	2.4752138	8.744067	1
TCCAG	4629565	2.382894	6.057695	2
CTGCT	4617660	2.3566103	5.2474804	1
CTCCT	4660090	2.333504	7.8781614	1
CTGGG	4390500	2.285434	8.494837	1
CAGGA	4279935	2.264394	5.440695	1
CTTCA	4287385	2.2050562	5.579612	1
CTCCA	4358720	2.2012632	8.308107	1
CCCAG	4298205	2.1723883	7.329295	1
CAGAA	3965210	2.1141825	5.03047	1
CTCTG	4009530	2.0462527	6.454418	1
CTGCA	3906215	2.010577	5.0271244	1
TGGAA	3489745	1.880281	5.093129	2
CTGGC	3649525	1.8639727	5.2535357	1
CTGAA	3515855	1.8586965	5.48809	1
CTCAG	3404430	1.7523019	5.9167128	1
CTGGT	3226285	1.6781088	5.210987	1
CTTGG	3132885	1.629528	5.0700345	1
CTCCC	3138465	1.5431825	5.1805296	1
>>END_MODULE
